Detailed information of SNP:
|
SNP ID:
sf1118065283(Gbrowse)
Chromosome: chr11 Position: 18065283 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 97.09% | 2.91% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 46.88% | 53.12% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118065283 | G->A | LOC_Os11g31680(LOC_Os11g31680.1) | INTRON |