Detailed information of SNP:
|
SNP ID:
sf1118249482(Gbrowse)
Chromosome: chr11 Position: 18249482 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 95.93% | 4.07% |
| All Indica | 794 | 95.72% | 4.28% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 55 | 60.00% | 40.00% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118249482 | C->T | LOC_Os11g31840(LOC_Os11g31840.1) | INTRON |