Detailed information of SNP:
|
SNP ID:
sf1118289405(Gbrowse)
Chromosome: chr11 Position: 18289405 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 62.93% | 37.07% |
| All Indica | 785 | 96.18% | 3.82% |
| All Japonica | 493 | 4.46% | 95.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 206 | 91.26% | 8.74% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118289405 | T->A | LOC_Os11g31910(LOC_Os11g31910.1) | UTR_5_PRIME |