Detailed information of SNP:
|
SNP ID:
sf1118292667(Gbrowse)
Chromosome: chr11 Position: 18292667 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 64.76% | 35.24% |
| All Indica | 786 | 97.07% | 2.93% |
| All Japonica | 479 | 5.64% | 94.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 329 | 5.17% | 94.83% |
| Tropical Japonica | 88 | 7.95% | 92.05% |
| Japonica Intermediate | 62 | 4.84% | 95.16% |
| Group VI/Aromatic | 8 | 50.00% | 50.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118292667 | A->G | LOC_Os11g31910(LOC_Os11g31910.1) | Non-Synonymous SNP |