Detailed information of SNP:
|
SNP ID:
sf1118305994(Gbrowse)
Chromosome: chr11 Position: 18305994 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 95.91% | 4.09% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118305994 | A->C | LOC_Os11g31940(LOC_Os11g31940.1) | Synonymous |