Detailed information of SNP:
|
SNP ID:
sf1118330349(Gbrowse)
Chromosome: chr11 Position: 18330349 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 82.61% | 17.39% |
| All Indica | 769 | 69.44% | 30.56% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 66.76% | 33.24% |
| Indica II | 207 | 61.84% | 38.16% |
| Indica Intermediate | 207 | 81.64% | 18.36% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118330349 | C->T | INTERGENIC | None |