Detailed information of SNP:
|
SNP ID:
sf1118339562(Gbrowse)
Chromosome: chr11 Position: 18339562 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.88% | 49.12% |
| All Indica | 798 | 77.32% | 22.68% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118339562 | C->T | INTERGENIC | None |