Detailed information of SNP:
|
SNP ID:
sf1118346987(Gbrowse)
Chromosome: chr11 Position: 18346987 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.95% | 7.05% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118346987 | C->T | INTERGENIC | None |