Detailed information of SNP:
|
SNP ID:
sf1118347896(Gbrowse)
Chromosome: chr11 Position: 18347896 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 71.68% | 28.32% |
| All Indica | 796 | 54.52% | 45.48% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 47.06% | 52.94% |
| Indica II | 212 | 50.00% | 50.00% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118347896 | C->T | INTERGENIC | None |