Detailed information of SNP:
|
SNP ID:
sf1118353018(Gbrowse)
Chromosome: chr11 Position: 18353018 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.34% | 45.66% |
| All Indica | 798 | 86.34% | 13.66% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118353018 | T->A | INTERGENIC | None |