Detailed information of SNP:
|
SNP ID:
sf1118361864(Gbrowse)
Chromosome: chr11 Position: 18361864 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.37% | 6.63% |
| All Indica | 797 | 92.97% | 7.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118361864 | T->A | INTERGENIC | None |