Detailed information of SNP:
|
SNP ID:
sf1118384097(Gbrowse)
Chromosome: chr11 Position: 18384097 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 82.55% | 17.45% |
| All Indica | 757 | 74.37% | 25.63% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 346 | 79.48% | 20.52% |
| Indica II | 209 | 66.51% | 33.49% |
| Indica Intermediate | 202 | 73.76% | 26.24% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118384097 | C->T | LOC_Os11g31990(LOC_Os11g31990.1) | Non-Synonymous SNP |