Detailed information of SNP:
|
SNP ID:
sf1118400013(Gbrowse)
Chromosome: chr11 Position: 18400013 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 54.53% | 45.47% |
| All Indica | 797 | 82.31% | 17.69% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 70.48% | 29.52% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118400013 | G->A | INTERGENIC | None |