Detailed information of SNP:
|
SNP ID:
sf1118410708(Gbrowse)
Chromosome: chr11 Position: 18410708 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 62.12% | 37.88% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118410708 | G->T | LOC_Os11g32030(LOC_Os11g32030.1) | UTR_3_PRIME |