Detailed information of SNP:
|
SNP ID:
sf1118415107(Gbrowse)
Chromosome: chr11 Position: 18415107 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.56% | 9.44% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118415107 | T->A | INTERGENIC | None |