Detailed information of SNP:
|
SNP ID:
sf1118539467(Gbrowse)
Chromosome: chr11 Position: 18539467 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1273 | 54.83% | 45.17% |
| All Indica | 793 | 45.02% | 54.98% |
| All Japonica | 369 | 83.47% | 16.53% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 28.34% | 71.66% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 206 | 45.63% | 54.37% |
| Temperate Japonica | 270 | 84.81% | 15.19% |
| Tropical Japonica | 56 | 76.79% | 23.21% |
| Japonica Intermediate | 43 | 83.72% | 16.28% |
| Group VI/Aromatic | 7 | 71.43% | 28.57% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118539467 | A->G | LOC_Os11g32180(LOC_Os11g32180.1) | INTRON |