Detailed information of SNP:
|
SNP ID:
sf1118541681(Gbrowse)
Chromosome: chr11 Position: 18541681 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 77.34% | 22.66% |
| All Indica | 794 | 88.29% | 11.71% |
| All Japonica | 471 | 59.66% | 40.34% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 371 | 92.18% | 7.82% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 321 | 50.78% | 49.22% |
| Tropical Japonica | 86 | 79.07% | 20.93% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118541681 | G->A | LOC_Os11g32180(LOC_Os11g32180.1) | INTRON |