Detailed information of SNP:
|
SNP ID:
sf1118566679(Gbrowse)
Chromosome: chr11 Position: 18566679 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 50.36% | 49.64% |
| All Indica | 798 | 84.84% | 15.16% |
| All Japonica | 495 | 1.01% | 98.99% |
| Aus | 58 | 15.52% | 84.48% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118566679 | C->T | INTERGENIC | None |