Detailed information of SNP:
|
SNP ID:
sf1118566926(Gbrowse)
Chromosome: chr11 Position: 18566926 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.03% | 46.97% |
| All Indica | 798 | 20.18% | 79.82% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 8.29% | 91.71% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118566926 | C->G | INTERGENIC | None |