Detailed information of SNP:
|
SNP ID:
sf1118567869(Gbrowse)
Chromosome: chr11 Position: 18567869 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 91.08% | 8.92% |
| All Indica | 796 | 89.95% | 10.05% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118567869 | G->A | INTERGENIC | None |