Detailed information of SNP:
|
SNP ID:
sf1118568728(Gbrowse)
Chromosome: chr11 Position: 18568728 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.28% | 43.72% |
| All Indica | 798 | 25.44% | 74.56% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 14.44% | 85.56% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 211 | 37.91% | 62.09% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118568728 | G->A | INTERGENIC | None |