Detailed information of SNP:
|
SNP ID:
sf1118589532(Gbrowse)
Chromosome: chr11 Position: 18589532 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.08% | 42.92% |
| All Indica | 799 | 36.17% | 63.83% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 57.87% | 42.13% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 26.07% | 73.93% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118589532 | T->C | INTERGENIC | None |