Detailed information of SNP:
|
SNP ID:
sf1118644284(Gbrowse)
Chromosome: chr11 Position: 18644284 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.07% | 46.93% |
| All Indica | 797 | 30.24% | 69.76% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 55.08% | 44.92% |
| Indica II | 212 | 2.36% | 97.64% |
| Indica Intermediate | 211 | 14.22% | 85.78% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118644284 | A->G | INTERGENIC | None |