Detailed information of SNP:
|
SNP ID:
sf1118691004(Gbrowse)
Chromosome: chr11 Position: 18691004 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 93.36% | 6.64% |
| All Indica | 797 | 91.47% | 8.53% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118691004 | T->G | INTERGENIC | None |