Detailed information of SNP:
|
SNP ID:
sf1118703831(Gbrowse)
Chromosome: chr11 Position: 18703831 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.70% | 40.30% |
| All Indica | 797 | 38.77% | 61.23% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 57.22% | 42.78% |
| Indica II | 212 | 7.55% | 92.45% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118703831 | C->T | LOC_Os11g32470(LOC_Os11g32470.1) | INTRON |