Detailed information of SNP:
|
SNP ID:
sf1118704015(Gbrowse)
Chromosome: chr11 Position: 18704015 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.65% | 40.35% |
| All Indica | 796 | 38.69% | 61.31% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 373 | 57.37% | 42.63% |
| Indica II | 212 | 7.55% | 92.45% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118704015 | T->C | LOC_Os11g32470(LOC_Os11g32470.1) | INTRON |