Detailed information of SNP:
|
SNP ID:
sf1118736666(Gbrowse)
Chromosome: chr11 Position: 18736666 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 63.71% | 36.29% |
| All Indica | 799 | 48.44% | 51.56% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 62.40% | 37.60% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118736666 | A->C | INTERGENIC | None |