Detailed information of SNP:
|
SNP ID:
sf1118761166(Gbrowse)
Chromosome: chr11 Position: 18761166 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.01% | 39.99% |
| All Indica | 799 | 39.92% | 60.08% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 59.47% | 40.53% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 211 | 37.91% | 62.09% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118761166 | G->A | LOC_Os11g32580(LOC_Os11g32580.1) | Synonymous |