Detailed information of SNP:
|
SNP ID:
sf1118762388(Gbrowse)
Chromosome: chr11 Position: 18762388 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 84.27% | 15.73% |
| All Indica | 799 | 75.59% | 24.41% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118762388 | G->A | INTERGENIC | None |