Detailed information of SNP:
|
SNP ID:
sf1118792349(Gbrowse)
Chromosome: chr11 Position: 18792349 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 78.57% | 21.43% |
| All Indica | 797 | 70.51% | 29.49% |
| All Japonica | 494 | 98.58% | 1.42% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 212 | 34.43% | 65.57% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118792349 | C->A | INTERGENIC | None |