Detailed information of SNP:
|
SNP ID:
sf1118820170(Gbrowse)
Chromosome: chr11 Position: 18820170 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1251 | 93.21% | 6.79% |
| All Indica | 694 | 89.48% | 10.52% |
| All Japonica | 437 | 99.31% | 0.69% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 311 | 87.14% | 12.86% |
| Indica II | 199 | 96.98% | 3.02% |
| Indica Intermediate | 184 | 85.33% | 14.67% |
| Temperate Japonica | 295 | 99.32% | 0.68% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118820170 | G->T | INTERGENIC | None |