Detailed information of SNP:
|
SNP ID:
sf1118822167(Gbrowse)
Chromosome: chr11 Position: 18822167 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1299 | 85.60% | 14.40% |
| All Indica | 768 | 99.35% | 0.65% |
| All Japonica | 412 | 60.44% | 39.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 98.88% | 1.12% |
| Indica II | 203 | 99.51% | 0.49% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 271 | 67.53% | 32.47% |
| Tropical Japonica | 81 | 32.10% | 67.90% |
| Japonica Intermediate | 60 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118822167 | G->A | LOC_Os11g32660(LOC_Os11g32660.1) | INTRON |