Detailed information of SNP:
|
SNP ID:
sf1118858065(Gbrowse)
Chromosome: chr11 Position: 18858065 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.28% | 49.72% |
| All Indica | 798 | 22.18% | 77.82% |
| All Japonica | 495 | 96.97% | 3.03% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 9.09% | 90.91% |
| Indica II | 213 | 37.56% | 62.44% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118858065 | G->A | INTERGENIC | None |