Detailed information of SNP:
|
SNP ID:
sf1118860421(Gbrowse)
Chromosome: chr11 Position: 18860421 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1257 | 55.61% | 44.39% |
| All Indica | 671 | 24.14% | 75.86% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 35 | 31.43% | 68.57% |
| Indica I | 298 | 9.73% | 90.27% |
| Indica II | 208 | 40.38% | 59.62% |
| Indica Intermediate | 165 | 29.70% | 70.30% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118860421 | T->C | INTERGENIC | None |