Detailed information of SNP:
|
SNP ID:
sf1118863841(Gbrowse)
Chromosome: chr11 Position: 18863841 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.91% | 46.09% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118863841 | A->G | INTERGENIC | None |