Detailed information of SNP:
|
SNP ID:
sf1118863917(Gbrowse)
Chromosome: chr11 Position: 18863917 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.80% | 43.20% |
| All Indica | 799 | 35.54% | 64.46% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 27.20% | 72.80% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118863917 | T->C | INTERGENIC | None |