Detailed information of SNP:
|
SNP ID:
sf1118878090(Gbrowse)
Chromosome: chr11 Position: 18878090 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 63.87% | 36.13% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 4.23% | 95.77% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118878090 | A->G | INTERGENIC | None |