Detailed information of SNP:
SNP ID:
sf1118878151(Gbrowse)
Chromosome: chr11 Position: 18878151 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 64.17% | 35.83% |
All Indica | 799 | 99.50% | 0.50% |
All Japonica | 496 | 4.23% | 95.77% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 3.28% | 96.72% |
Tropical Japonica | 94 | 4.26% | 95.74% |
Japonica Intermediate | 67 | 8.96% | 91.04% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1118878151 | T->C | INTERGENIC | None |