Detailed information of SNP:
|
SNP ID:
sf1118908931(Gbrowse)
Chromosome: chr11 Position: 18908931 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 58.90% | 41.10% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118908931 | C->T | INTERGENIC | None |