Detailed information of SNP:
|
SNP ID:
sf1118909069(Gbrowse)
Chromosome: chr11 Position: 18909069 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 61.43% | 38.57% |
| All Indica | 793 | 95.96% | 4.04% |
| All Japonica | 496 | 4.23% | 95.77% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118909069 | A->G | INTERGENIC | None |