Detailed information of SNP:
|
SNP ID:
sf1118909252(Gbrowse)
Chromosome: chr11 Position: 18909252 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.30% | 39.70% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118909252 | T->C | LOC_Os11g32800(LOC_Os11g32800.1) | Non-Synonymous SNP |