Detailed information of SNP:
|
SNP ID:
sf1118938299(Gbrowse)
Chromosome: chr11 Position: 18938299 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.27% | 39.73% |
| All Indica | 797 | 94.86% | 5.14% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118938299 | C->T | INTERGENIC | None |