Detailed information of SNP:
|
SNP ID:
sf1118938386(Gbrowse)
Chromosome: chr11 Position: 18938386 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 59.29% | 40.71% |
| All Indica | 795 | 93.84% | 6.16% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118938386 | G->A | INTERGENIC | None |