Detailed information of SNP:
|
SNP ID:
sf1118939907(Gbrowse)
Chromosome: chr11 Position: 18939907 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1276 | 52.43% | 47.57% |
| All Indica | 670 | 85.37% | 14.63% |
| All Japonica | 496 | 4.23% | 95.77% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 316 | 83.86% | 16.14% |
| Indica II | 177 | 86.44% | 13.56% |
| Indica Intermediate | 177 | 87.01% | 12.99% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 32 | 56.25% | 43.75% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118939907 | T->C | LOC_Os11g32850(LOC_Os11g32850.1) | Non-Synonymous SNP |