Detailed information of SNP:
|
SNP ID:
sf1118943098(Gbrowse)
Chromosome: chr11 Position: 18943098 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 96.85% | 3.15% |
| All Indica | 778 | 95.76% | 4.24% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 363 | 98.35% | 1.65% |
| Indica II | 207 | 91.30% | 8.70% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118943098 | G->A | LOC_Os11g32850(LOC_Os11g32850.1) | Synonymous |