Detailed information of SNP:
|
SNP ID:
sf1118943278(Gbrowse)
Chromosome: chr11 Position: 18943278 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 94.83% | 5.17% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 61 | 78.69% | 21.31% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118943278 | A->G | LOC_Os11g32850(LOC_Os11g32850.1) | Synonymous |