Detailed information of SNP:
|
SNP ID:
sf1118959160(Gbrowse)
Chromosome: chr11 Position: 18959160 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.94% | 34.06% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118959160 | A->G | LOC_Os11g32880(LOC_Os11g32880.2) | INTRON |
| sf1118959160 | A->G | LOC_Os11g32880(LOC_Os11g32880.3) | INTRON |
| sf1118959160 | A->G | LOC_Os11g32880(LOC_Os11g32880.1) | INTRON |