Detailed information of SNP:
|
SNP ID:
sf1118963989(Gbrowse)
Chromosome: chr11 Position: 18963989 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 59.50% | 40.50% |
| All Indica | 795 | 32.33% | 67.67% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 374 | 31.82% | 68.18% |
| Indica II | 212 | 25.47% | 74.53% |
| Indica Intermediate | 209 | 40.19% | 59.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118963989 | G->A | INTERGENIC | None |