Detailed information of SNP:
|
SNP ID:
sf1118980237(Gbrowse)
Chromosome: chr11 Position: 18980237 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 59.11% | 40.89% |
| All Indica | 797 | 91.34% | 8.66% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118980237 | A->G | INTERGENIC | None |