Detailed information of SNP:
|
SNP ID:
sf1118994980(Gbrowse)
Chromosome: chr11 Position: 18994980 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 60.17% | 39.83% |
| All Indica | 792 | 94.95% | 5.05% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 62 | 82.26% | 17.74% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118994980 | T->C | INTERGENIC | None |